PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.SS15E
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 112aa    MW: 12676.7 Da    PI: 9.2452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.SS15EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-108491055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 + RR++iN+++  L++l+P +    +k   Ka +L k ++YI+sLq
  Araip.SS15E  8 KARREKINERMKILQDLVPGC----NKVIGKALVLDKIINYIQSLQ 49
                 67******************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.62148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-6854IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7849IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-81053No hitNo description
Gene3DG3DSA:4.10.280.101.3E-161167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MSFVHHWKAR REKINERMKI LQDLVPGCNK VIGKALVLDK IINYIQSLQR QVEFLSMKLE  60
AVNSRLSMNP TIDGFSSKDV TPIIDGTSVL SHLSWQDNNL NLSIAPSSET LI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908475e-67BT090847.1 Soybean clone JCVI-FLGm-5B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200839.12e-45PREDICTED: transcription factor BPE-like
SwissprotQ0JXE72e-35BPE_ARATH; Transcription factor BPE
TrEMBLI1JX091e-41I1JX09_SOYBN; Uncharacterized protein
TrEMBLI1KCM52e-41I1KCM5_SOYBN; Uncharacterized protein
STRINGGLYMA06G20000.15e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.16e-37BIG PETAL P